Macromolecular Nexus

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@macromnex

A unified ecosystem for macromolecular design tools and automated workflows

On GitHub since October 2025

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Published Tools

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Public Repos

Published Tools

13 MCP Serversacross 2 categories

Alphafold3 Mcp

MacromNex

AlphaFold3 MCP server for protein structure prediction, supporting batch prediction

MCP Serverai

21 dir

Bindcraft Mcp

MacromNex

BindCraft MCP server for de novo protein binder design

MCP Serverai

21 dir

Boltz Mcp

MacromNex

Boltz2 MCP server for protein structure and affinity prediction

MCP Serverai

21 dir

Boltzgen Mcp

MacromNex

BoltzGen MCP server for protein binder design

MCP Serverai

21 dir

Mutcompute Mcp

MacromNex

MutCompute MCP server for protein mutation effect prediction

MCP Serverai

21 dir

Alphafold2 Mcp

MacromNex

AlphaFold2 MCP server for protein structure prediction, supporting complex and batch predictions

MCP Serverai

11 dir

Amber Mcp

MacromNex

AMBER MCP server for molecular dynamics simulations and analysis

MCP Serveruncategorised

11 dir

Ev Onehot Mcp

MacromNex

EV+Onehot MCP server for protein fitness prediction combining evolutionary coupling and one-hot encoding

MCP Serveruncategorised

11 dir

Gromacs Mcp

MacromNex

GROMACS MCP server for molecular dynamics simulations

MCP Serveruncategorised

11 dir

Netmhc2pan Mcp

MacromNex

NetMHCIIpan MCP server for MHC Class II binding prediction

MCP Serveruncategorised

11 dir

Proteinmpnn Mcp

MacromNex

ProteinMPNN MCP server for protein sequence design (inverse folding)

MCP Serverai

11 dir

Prottrans Mcp

MacromNex

ProtTrans MCP server for protein embeddings and fitness modeling

MCP Serveruncategorised

11 dir

Rfdiffusion2 Mcp

MacromNex

RFdiffusion2 MCP server for protein structure generation (backbone)

MCP Serverai

11 dir